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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16945173_16945916_R

Intron Information:

Intron Rank:
135321
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16945173 - 16945916
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
GGAACTTTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGGGAA
U12 Branch Point Sequence:
GGAACTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
49.8
-0
1.2
49
42.8
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
56.4
0.2
1.5
60.37
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020209
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040773
16944053 - 16947121
3069