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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16945999_16947017_R

Intron Information:

Intron Rank:
135322
Intron Class:
major
Intron Phase:
Intron Coordinates:
16945999 - 16947017
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTGTTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.2
41.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
29.2
-2.4
3.4
38.5
46.6
Minor BPS
59.4
0.29
1.9
73.38
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020209
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040773
16944053 - 16947121
3069