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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16951279_16953430_R

Intron Information:

Intron Rank:
136629
Intron Class:
major
Intron Phase:
Intron Coordinates:
16951279 - 16953430
Intron Length:
2152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTGCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
68.9
0.43
1
63.3
41.8
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
60
0.31
2.1
76.24
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029712
16951123 - 16959358
8236