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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16957345_16957894_R

Intron Information:

Intron Rank:
136632
Intron Class:
major
Intron Phase:
Intron Coordinates:
16957345 - 16957894
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
74.7
0.85
1.4
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037811
16957012 - 16961637
4626