About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16958248_16959283_R

Intron Information:

Intron Rank:
136631
Intron Class:
major
Intron Phase:
Intron Coordinates:
16958248 - 16959283
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGGAT
5'SS Class:
major
3'SS Sequence:
TGTAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66
39.5
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
80.8
0.69
0.9
77.2
41.4
Minor 5ss
29.9
-2.3
3.8
46.5
48.8
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029712
16951123 - 16959358
8236
ENSAPLT00000037811
16957012 - 16961637
4626