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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16963463_16965068_R

Intron Information:

Intron Rank:
136625
Intron Class:
major
Intron Phase:
Intron Coordinates:
16963463 - 16965068
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAAAAA
5'SS Class:
major
3'SS Sequence:
TCCGTCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CAGTTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
35.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.8
76.6
32
Minor 5ss
30.7
-2.2
3.2
39.2
46.2
Minor BPS
55.7
0.26
1.6
67.86
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023422
16961462 - 16966795
5334