About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16965647_16966081_R

Intron Information:

Intron Rank:
136627
Intron Class:
major
Intron Phase:
Intron Coordinates:
16965647 - 16966081
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGATG
5'SS Class:
major
3'SS Sequence:
CTTTGTCAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTTGCAGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
66.7
0.38
1
63.1
37.5
Minor 5ss
42
-0.9
3.1
57
47.4
Minor BPS
48.5
-0
2.3
73.64
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020963
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023422
16961462 - 16966795
5334