Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_16981432_16981627_R

Intron Information:

Intron Rank:

148678

Intron Class:

major

Intron Phase:

Intron Coordinates:

16981432 - 16981627

Intron Length:

196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCCACTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TTTTTTTCCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

38.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

80.3

0.68

0.8

75.7

34.2

Minor 5ss

36.4

-1.5

3.3

49.3

46.9

Minor BPS

58.1

0.34

83.3

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027457

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036436

16978988 - 16982339

3352