Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17025937_17026378_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

17025937 - 17026378

Intron Length:

442

Sequence Information:

Terminal Dinucleotides:

GC-AA

5'SS Sequence:

CAA|GCGTTTGTA

5'SS Class:

weak_major

3'SS Sequence:

GCACTGTTTACAA|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

GCTTTTGCAACA

Flanking Amino Acid:

PNCNTHVGSYKLAGSCLPLR

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.4

0.13

1.3

61.6

40.4

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

40.9

-0.5

3.2

56.3

43.3

Minor 5ss

28.4

-2.5

4.1

39.3

40.9

Minor BPS

46.2

-0.2

2.1

59.24

41.1

Associated Gene:

Gene:

LITAF

Ensembl Gene ID:

ENSAPLG00000002299

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028876

17025486 - 17033562

8077