Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17026957_17029368_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17026957 - 17029368

Intron Length:

2412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGCCTG

5'SS Class:

major

3'SS Sequence:

TTTCTTTGCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TATTGAATAAAC

Flanking Amino Acid:

TGQPMPTNNPVTVQTVYVQQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

47.6

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

83.8

0.76

0.8

84.1

30.8

Minor 5ss

-0.9

3.1

57.5

46.6

Minor BPS

45.2

-0.3

2.3

63.55

Associated Gene:

Gene:

LITAF

Ensembl Gene ID:

ENSAPLG00000002299

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040612

17026166 - 17033562

7397

ENSAPLT00000028876

17025486 - 17033562

8077

ENSAPLT00000025268

17026369 - 17060520

34152