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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17150572_17150975_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17150572 - 17150975
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTAT
5'SS Class:
major
3'SS Sequence:
CATTTCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATTTCTTAACA
Flanking Amino Acid:
FRMHLSSEEAKIDITRNDLP
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
79.6
29.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.9
0.63
0.9
73.5
35.5
Minor 5ss
43.6
-0.7
2.8
58.5
40.3
Minor BPS
79.6
0.92
1.1
80.05
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024348
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038187
17149062 - 17152938
3877