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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17152027_17152912_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17152027 - 17152912
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACCTC
5'SS Class:
major
3'SS Sequence:
TTTCATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCTCCATTT
Flanking Amino Acid:
MILCFQMKRMSCCSIMHS
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.6
44.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.5
0.87
0.7
80.8
36.5
Minor 5ss
40.7
-1
3.4
59.2
45.5
Minor BPS
46.2
-0.2
2
68.41
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024348
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038187
17149062 - 17152938
3877