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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17162218_17164493_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17162218 - 17164493
Intron Length:
2276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAA
Flanking Amino Acid:
FTSALHSLKKDYLGILQL*
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.2
0.52
1
76.2
32.7
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
70.8
0.65
1.5
81.76
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028526
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044697
17156191 - 17179480
23290