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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17164588_17171574_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17164588 - 17171574
Intron Length:
6987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGTC
5'SS Class:
major
3'SS Sequence:
TTTATTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATTTTTATTC
Flanking Amino Acid:
KLLDFLSNYEPGVIGYFEFN
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
72.7
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.8
0.92
0.7
89
27.8
Minor 5ss
36.2
-1.6
3.5
52.7
44.5
Minor BPS
56.5
0.18
1.5
63.53
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028526
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044697
17156191 - 17179480
23290