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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17171705_17173160_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17171705 - 17173160
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAAGTCTTAATG
Flanking Amino Acid:
YFPVIHLYHRSFGPIEYKGP
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72.7
0.51
1
66.9
43.8
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
61.8
0.23
1.5
60.77
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028526
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044697
17156191 - 17179480
23290