About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17173259_17173965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17173259 - 17173965
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GAATTTTTATCT
Flanking Amino Acid:
ERVASRLSDQVLFVAINCWW
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.8
0.67
0.9
73.2
36.6
Minor 5ss
43.3
-0.7
2.9
58.9
45.5
Minor BPS
57.8
0.32
1.6
70.32
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028526
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044697
17156191 - 17179480
23290