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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17174183_17179025_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17174183 - 17179025
Intron Length:
4843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGCG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
GCTCTCTTAACT
Flanking Amino Acid:
AFLVALKVTCSRAKDVTMPA
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.3
41.2
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
81.1
0.7
0.7
76.1
26.1
Minor 5ss
29.6
-2.3
3.4
39
46.3
Minor BPS
74.5
0.85
1.2
81.89
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028526
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044697
17156191 - 17179480
23290