Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17181527_17182784_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17181527 - 17182784

Intron Length:

1258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCTTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAA

U12 Branch Point Sequence:

TGTGTCTTAACA

Flanking Amino Acid:

FPTGYFSICDRYMAGTCTEG

Intron Amino Acid Position:

888

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

85.2

32.2

Major BPS

78.4

0.71

0.9

69.4

37.7

Major PPT

74.8

0.56

69.8

40.4

Minor 5ss

37.2

-1.4

3.6

57.3

47.4

Minor BPS

75.1

0.78

1.3

79.59

36.6

Associated Gene:

Gene:

ZC3H7A

Ensembl Gene ID:

ENSAPLG00000013636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017971

17181337 - 17202165

20829

ENSAPLT00000014323

17181337 - 17202165

20829