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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17184981_17185348_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17184981 - 17185348
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CATTTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCATTTTTAACT
Flanking Amino Acid:
KKYCSAKARHPWTKDRRVVL
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.2
43.2
Major BPS
100
1.24
0.5
100
0
Major PPT
68.7
0.42
1
63.7
41.6
Minor 5ss
36.9
-1.5
2.7
47
41.7
Minor BPS
69.9
0.7
1.2
75.56
41.8

Associated Gene:

Gene:
ZC3H7A
Ensembl Gene ID:
ENSAPLG00000013636
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017971
17181337 - 17202165
20829
ENSAPLT00000014323
17181337 - 17202165
20829