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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17193221_17194216_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17193221 - 17194216
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTCCTTTTATT
Flanking Amino Acid:
STFSISDPKRDLSSSASRDG
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.7
0.76
0.7
82.4
29.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
61.1
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
ZC3H7A
Ensembl Gene ID:
ENSAPLG00000013636
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017971
17181337 - 17202165
20829
ENSAPLT00000014323
17181337 - 17202165
20829