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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17197087_17197967_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17197087 - 17197967
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAACTCTT
5'SS Class:
weak_major
3'SS Sequence:
CTCTTGTGCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACAATTTTAACG
Flanking Amino Acid:
AYVRAKVRLHLLRGIFFSHL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
67.4
43.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
60.6
0.24
1.1
61.8
38
Minor 5ss
48.3
-0.2
2.9
73.7
36.3
Minor BPS
56.7
0.07
1.4
54.63
40.7

Associated Gene:

Gene:
ZC3H7A
Ensembl Gene ID:
ENSAPLG00000013636
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017971
17181337 - 17202165
20829