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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17200069_17202092_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17200069 - 17202092
Intron Length:
2024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTCTGTGT
5'SS Class:
weak_major
3'SS Sequence:
TTATTTATACGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTTATTTATAC
Flanking Amino Acid:
IKKGLQFIEYELVRNLFNEG
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.2
48.2
42.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
55.4
0.12
1.8
64
45.6
Minor 5ss
34
-1.8
3.4
45.5
44.4
Minor BPS
48.1
-0.1
1.8
59.99
38.6

Associated Gene:

Gene:
ZC3H7A
Ensembl Gene ID:
ENSAPLG00000013636
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017971
17181337 - 17202165
20829
ENSAPLT00000014323
17181337 - 17202165
20829