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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17244608_17245161_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17244608 - 17245161
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTTTCCTAATT
Flanking Amino Acid:
QYEDIVTKLLDLKHPSWKQW
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
0.9
80.7
31.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.2
0.66
0.9
72.3
36.5
Minor 5ss
40.5
-1.1
3.4
59.8
40
Minor BPS
74.5
0.85
1.6
92.26
30

Associated Gene:

Gene:
BFAR
Ensembl Gene ID:
ENSAPLG00000013901
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014483
17244460 - 17251789
7330