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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17245333_17245596_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17245333 - 17245596
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TGATACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTGTTTTAAAT
Flanking Amino Acid:
KPPQNLWEYKAVNPGKSLFI
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
100
1.24
0.5
100
0
Major PPT
74.9
0.56
0.9
70.5
40.6
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
64.5
0.53
1.5
78.79
37.6

Associated Gene:

Gene:
BFAR
Ensembl Gene ID:
ENSAPLG00000013901
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014483
17244460 - 17251789
7330