About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17245742_17248914_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17245742 - 17248914
Intron Length:
3173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACCTTCTGAATT
Flanking Amino Acid:
EKFLLEKVNGRLLLTLTEED
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.3
0.7
0.8
76.7
31.9
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
60.8
0.42
1.4
70.32
41.3

Associated Gene:

Gene:
BFAR
Ensembl Gene ID:
ENSAPLG00000013901
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014483
17244460 - 17251789
7330