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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17249085_17249418_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17249085 - 17249418
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
AATCTACCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
GVLTALTGVAVVLLGYHWSS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.5
0.39
0.9
59.7
36.2
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
BFAR
Ensembl Gene ID:
ENSAPLG00000013901
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014483
17244460 - 17251789
7330