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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17249621_17250412_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17249621 - 17250412
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTTCCCATTA
Flanking Amino Acid:
EGFPKVNILLRDVIERLFSD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.3
0.66
0.8
79.9
27.3
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
47.5
-0.1
2
67.86
38.9

Associated Gene:

Gene:
BFAR
Ensembl Gene ID:
ENSAPLG00000013901
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014483
17244460 - 17251789
7330