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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17256767_17256975_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17256767 - 17256975
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TTCTTCCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CGTGATTTGACT
Flanking Amino Acid:
MEVIRSNFKDNLSKVC
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
62.5
38.1
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
82
0.72
0.7
77.4
24.6
Minor 5ss
28.8
-2.4
3.1
36.6
41.6
Minor BPS
52.3
0.15
1.7
68.32
42.9

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091