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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17257054_17257886_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17257054 - 17257886
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCG
5'SS Class:
major
3'SS Sequence:
TCTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTACCCAAAGC
Flanking Amino Acid:
DFLAIDGEFSGISDGPSVSA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
57.5
42.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.4
0.82
0.8
84.1
30.8
Minor 5ss
35.3
-1.7
3.5
47.7
48
Minor BPS
44.6
-0.4
2.2
59.64
45.4

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091