Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17260398_17262247_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17260398 - 17262247

Intron Length:

1850

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TATTTTGTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

GTTATTTTATTT

Flanking Amino Acid:

SSPDVKFVCQSSSIDFLANQ

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

1.1

79.2

36.3

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

85.6

0.8

0.9

80.1

37.1

Minor 5ss

31.5

-2.1

2.4

34.9

40.7

Minor BPS

55.9

0.26

1.6

72.59

38.9

Associated Gene:

Gene:

PARN

Ensembl Gene ID:

ENSAPLG00000013914

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033374

17260164 - 17321036

60873

ENSAPLT00000014581

17256748 - 17293838

37091