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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17263890_17264650_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17263890 - 17264650
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTTTC
5'SS Class:
major
3'SS Sequence:
CTTTTGGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AGTAACATAATT
Flanking Amino Acid:
NESLELEPCTGFQRKLIYQT
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
73.2
39.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.9
0.65
0.9
76.9
37.3
Minor 5ss
39.7
-1.2
2.8
45.3
42.7
Minor BPS
50.2
0.08
1.8
70.58
39.7

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091