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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17266428_17267123_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17266428 - 17267123
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CATTCCTCAAAT
Flanking Amino Acid:
IHVETLESDKKERYIVISKV
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.7
44.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.2
0.68
0.8
78.3
34.8
Minor 5ss
40.7
-1
2.6
51.6
44.9
Minor BPS
65.1
0.55
1.7
79.18
42.3

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091