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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17267205_17269021_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17267205 - 17269021
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTCACT
Flanking Amino Acid:
REQQKQAKEQEELNDAVGFS
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.8
0.72
0.8
76.5
32.3
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
60
0.39
1.9
81.67
39.8

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033374
17260164 - 17321036
60873
ENSAPLT00000014581
17256748 - 17293838
37091