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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17270202_17271345_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17270202 - 17271345
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTACTGTTAATT
Flanking Amino Acid:
IHQFYCPLPDDLSEFKEVTS
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
66.5
0.37
1
63.9
41.3
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
57.6
0.32
2
77.74
38.9

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091