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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17270202_17271766_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17270202 - 17271766
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
AAACATTTTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTAGCCAAAACA
Flanking Amino Acid:
IHQFYCPLPDDLVKMTLLCF
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
49.5
-0
1.7
58.6
46
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
50.9
0.02
2.1
69.14
42.9

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033374
17260164 - 17321036
60873