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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17271390_17271825_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17271390 - 17271825
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
ATATACTTAACT
Flanking Amino Acid:
FKEVTSCVFPRLLDTKLMAS
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.5
35
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
77.8
0.63
0.9
69.7
41
Minor 5ss
41.1
-1
3.1
58.7
45.3
Minor BPS
77.8
0.95
1.4
88.94
34.8

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091