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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17293395_17293740_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17293395 - 17293740
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTGTTTTTACCT
Flanking Amino Acid:
SLSQPEQVQIDIRGTDACLI
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
87.6
0.85
0.7
81.8
29.1
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
60.4
0.41
1.6
74.34
43.4

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014581
17256748 - 17293838
37091