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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17293399_17309141_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17293399 - 17309141
Intron Length:
15743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGTTTCTG
5'SS Class:
major
3'SS Sequence:
GATCTTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ACTCCTTTACGT
Flanking Amino Acid:
LSQPEQVQIGKRCTTIDSCA
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.1
57
41.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
65.8
0.36
1.1
60.7
44.5
Minor 5ss
40.3
-1.1
2.9
49.7
41
Minor BPS
49.3
0.03
1.9
67.07
44.1

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033374
17260164 - 17321036
60873