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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1730274_1730991_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1730274 - 1730991
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTGACTGTAAAA
Flanking Amino Acid:
LYSNLSLYRNPKCWSSLIMI
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.8
41
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
34.8
-1.7
3.1
45.9
42.4
Minor BPS
48.9
-0
2.1
65
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011695
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012193
1725342 - 1734343
9002