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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17309231_17318719_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17309231 - 17318719
Intron Length:
9489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCTAGAC
5'SS Class:
weak_major
3'SS Sequence:
ACCTATGTAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTATAGTAACT
Flanking Amino Acid:
KKIPDKNYLRIILNLSITIF
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.4
0.15
1.1
52.3
32.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59.7
0.22
1
54.3
39.5
Minor 5ss
26
-2.8
3.4
32.1
36.6
Minor BPS
48.5
-0
2.3
74.44
41.9

Associated Gene:

Gene:
PARN
Ensembl Gene ID:
ENSAPLG00000013914
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033374
17260164 - 17321036
60873