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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1731069_1731362_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1731069 - 1731362
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
GAGTCTTGGATT
Flanking Amino Acid:
IQEPAPWITTGSPLKDAVLI
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.86
1
84
30.4
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
26.1
-2.7
4.1
36.8
41.9
Minor BPS
52.6
0.16
1.4
64.9
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011695
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012193
1725342 - 1734343
9002