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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1731581_1731833_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1731581 - 1731833
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
TACTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TATGCATTTACT
Flanking Amino Acid:
LRAVKCNDTKGLRDLRDKIP
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.5
41.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
85
0.79
0.8
76.9
36.9
Minor 5ss
35
-1.7
2.8
37
40.5
Minor BPS
56.1
0.27
2.1
78.5
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011695
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012193
1725342 - 1734343
9002