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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1731888_1732293_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1731888 - 1732293
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGATTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTACCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAC
U12 Branch Point Sequence:
TTTTCTCTACCC
Flanking Amino Acid:
ARVEKLVDKMNYKEVVRYLR
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
0.9
71.3
35
Major BPS
58.9
0.22
1.3
58.4
40
Major PPT
80.2
0.68
0.8
73.7
35.9
Minor 5ss
37.8
-1.4
3.2
47.7
42.3
Minor BPS
61.1
0.33
1.9
78.9
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011695
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012193
1725342 - 1734343
9002