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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1735608_1736090_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1735608 - 1736090
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GACTGCTTAACT
Flanking Amino Acid:
CRSRNPEVVYKYSGVFALVT
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74.8
0.56
0.8
73.6
36.6
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
66.3
0.59
1.8
77.93
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019481
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018645
1734921 - 1738978
4058