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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1737745_1737905_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1737745 - 1737905
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTTCG
5'SS Class:
weak_major
3'SS Sequence:
TTTAACTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
ARYDCTIHPFERMECDTCSP
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
58.7
41.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.5
0.57
1
69.7
41.1
Minor 5ss
47.9
-0.2
2.3
55.3
43
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019481
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018645
1734921 - 1738978
4058