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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17416309_17418853_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17416309 - 17418853
Intron Length:
2545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTTTTGAATT
Flanking Amino Acid:
DLFDILIKSGEISLPIKEEP
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
66.1
0.58
1.4
79.72
37

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029061
17415247 - 17462602
47356
ENSAPLT00000026304
17415247 - 17497845
82599
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061