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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17418915_17420002_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17418915 - 17420002
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTATT
5'SS Class:
major
3'SS Sequence:
TCCTGCACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TTCTCCTGCACC
Flanking Amino Acid:
TRNIQTSHREISSAHSQQMD
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
83.7
34.8
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
68.7
0.42
0.9
61.4
33.7
Minor 5ss
40.3
-1.1
3.2
59.8
44.7
Minor BPS
61.6
0.35
2
75.11
41.5

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061
ENSAPLT00000029061
17415247 - 17462602
47356
ENSAPLT00000026304
17415247 - 17497845
82599