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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17423505_17424979_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17423505 - 17424979
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCACCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTCACC
Flanking Amino Acid:
QLPVGNIKLQAQSQAGVQTP
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
62.5
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74
0.54
0.8
70.6
30.1
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
66
0.49
1.8
78.58
37

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026304
17415247 - 17497845
82599
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061
ENSAPLT00000029061
17415247 - 17462602
47356