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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17426006_17428189_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17426006 - 17428189
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
PLPSSLDDLKVAELKMELKL
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.3
0.66
0.8
78.6
34.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029061
17415247 - 17462602
47356
ENSAPLT00000026304
17415247 - 17497845
82599
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061