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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_17430208_17431675_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17430208 - 17431675
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATATC
5'SS Class:
major
3'SS Sequence:
CATCCATAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CCATCCATAAAT
Flanking Amino Acid:
ATKPGPTLVKQSHPKNPNDK
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.8
35.4
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
57
0.16
1
52
35.7
Minor 5ss
38.6
-1.3
3.1
54
43.2
Minor BPS
56.8
0.29
1.8
71.17
45.1

Associated Gene:

Gene:
MRTFB
Ensembl Gene ID:
ENSAPLG00000014081
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026304
17415247 - 17497845
82599
ENSAPLT00000021114
17415247 - 17497830
82584
ENSAPLT00000014702
17415770 - 17497830
82061
ENSAPLT00000029061
17415247 - 17462602
47356